Conference Papers

  • Accurate Estimation of Intracellular Dynamics and Underlying Spatial Structures using Hierarchical Trajectory Smoothing I. Smal, N. Galjart, and E. MeijeringIEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2018)(Washington DC, USA, April 4-7, 2018) Preprint
  • Deep Neural Networks for Data Association in Particle Tracking Y. Yao, I. Smal, and E. Meijering IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2018) (Washington DC, USA, April 4-7, 2018) Preprint
  • Gaussian Processes for Trajectory Analysis in Microtubule Tracking Applications I. Smal, S. Basu, L. Sayas, N. Galjart, and E. Meijering IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2017) (Melbourne, Australia, April 18-21, 2017) Preprint
  • Poisson Point Processes for Solving Stochastic Inverse Problems in Fluorescence Microscopy I. Smal, E. Meijering European Conference on Computer Vision (ECCV) (Amsterdam, October 8-16, 2015) Preprint
  • Automatic detection of Neurons in High-Content Microscope Images Using Machine Learning Approaches G. Mata, M. Radojevic, I. Smal, M. Morales, E. Meijering, J. Rubio IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2016) (Prague, Czech republic, April 13-16, 2016) Preprint
  • 3D Catheter Tip Tracking in 2D X-ray Image Sequences Using a Hidden Markov Model and 3D Rotational Angiography P. Ambrosini, I. Smal, D. Ruijters, W.J. Niessen, A. Moelker and T. van Walsum 10th MICCAI Workshop on Augmented Environments for Computer-Assisted Interventions (Munich, Germany, October 5-9, 2015) Preprint
  • Automated Neuron Morphology Reconstruction using Fuzzy-Logic Detection and Bayesian Tracing Algorithms M. Radojevic, I. Smal, E. Meijering IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2015) (New York, USA, April 16 – 19, 2015) Preprint
  • Piecewise Constant Sequential Importance Sampling for Fast Particle Filtering O. Demirel, I. Smal, W. Niessen, E. Meijering, Ivo F. Sbalzarini Data Fusion & Target Tracking conference 2014 (Liverpool, UK, April 29-30, 2014) Preprint  Abstract
  • PPF – A Parallel Particle Filtering Library O. Demirel, I. Smal, W. Niessen, E. Meijering, Ivo F. Sbalzarini Data Fusion & Target Tracking conference 2014 (Liverpool, UK, April 29-30, 2014) Preprint  Abstract
  • Adaptive Distributed Resampling Algorithm with Non-Proportional Allocation O. Demirel, I. Smal, W. Niessen, E. Meijering, Ivo F. Sbalzarini IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 2014) (Florence, Italy, May 2-9, 2014) Preprint  Abstract
  • Fuzzy Logic Based Detection of Neuron Bifurcations in Microscopy Images M. Radojevic, I. Smal, W. Niessen, E. Meijering IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2014) (Beijing, China, April 29 – May 2, 2014) Preprint
  • Trans-Dimensional MCMC Methods for Fully Automatic Motion Analysis in Tagged MRI I. Smal, N. Carranza-Herrezuelo, S. Klein, W. Niessen and E. Meijering Medical Image Computing and Computer-Assisted Intervention – MICCAI 2011 (Toronto, Canada, September 18-22, 2011), G. Fichtinger, A. Martel, and T. Peters (Eds.): MICCAI 2011, Part I, LNCS 6891, pp. 573–580. Springer, Heidelberg (2011) Preprint
  • Quantitative Comparison of Tracking Methods for Motion Analysis in Tagged MRI I. Smal, N. Carranza-Herrezuelo, S. Klein, W. J. Niessen, E. Meijering IEEE International Symposium on Biomedical Imaging: From Nano to Macro – ISBI 2011 (Chicago, IL, USA, March 30 – April 2, 2011), IEEE, Piscataway, NJ, 2011 Preprint
  • Automated Lineage Tree Reconstruction from Caenorhabditis Elegans Image Data using Particle Filtering Based Cell Tracking N. Carranza Herrezuelo, I. Smal, O. Dzyubachyk, W. J. Niessen, E. Meijering IEEE International Symposium on Biomedical Imaging: From Nano to Macro – ISBI 2011 (Chicago, IL, USA, March 30 – April 2, 2011), IEEE, Piscataway, NJ, 2011 Preprint
  • Particle Filtering Methods for Motion Analysis in Tagged MRI I. Smal, W. J. Niessen, E. Meijering IEEE International Symposium on Biomedical Imaging: From Nano to Macro – ISBI 2010 (Rotterdam, NL, April 14-17, 2010), W. Niessen and E. Meijering (eds.), IEEE, Piscataway, NJ, 2010 Preprint
  • Accurate Estimation of Microtubule Dynamics using Kymographs and Variable-Rate Particle Filters I. Smal, I. Grigoriev, A. Akhmanova, W. J. Niessen, E. Meijering Annual International Conference of the IEEE Engineering in Medicine and Biology Society – EMBC 2009 (Minneapolis, MN, USA, September 2-6, 2009), B. He and Y. Kim (eds.), IEEE, Piscataway, NJ, 2009 Preprint
  • Quantitative Comparison of Spot Detection Methods in Live-Cell Fluorescence Microscopy Imaging I. Smal, M. Loog, W. Niessen, E. Meijering IEEE International Symposium on Biomedical Imaging: From Nano to Macro – ISBI 2009 (Boston, MA, USA, June 28 – July 1, 2009), W. C. Karl, B. Rosen, D. Brooks (eds.), IEEE, Piscataway, NJ, 2009 Preprint
  • A New Detection Scheme for Multiple Object Tracking in Fluorescence Microscopy by Joint Probabilistic Data Association Filtering I. Smal, W. Niessen, E. Meijering IEEE International Symposium on Biomedical Imaging: From Nano to Macro – ISBI 2008 (Paris, France, May 14-17, 2008), J.-C. Olivo-Marin, I. Bloch, A. Laine (eds.), IEEE, Piscataway, NJ, 2008, pp. 264-267 Preprint
  • Bayesian Tracking of Tubular Structures and Its Application to Carotid Arteries in CTA M. Schaap, R. Manniesing, I. Smal, T. van Walsum, A. van der Lugt and W.J. Niessen Medical Image Computing and Computer-Assisted Intervention – MICCAI 2007 (Brisbane, Australia, October 29-November 2, 2007), Lecture Notes in Computer Science, Springer-Verlag, Berlin, vol. 4791, 2007, pp. 562-570 Preprint  Reprint
  • Rao-Blackwellized Marginal Particle Filtering for Multiple Object Tracking in Molecular Bioimaging I. Smal, K. Draegestein, N. Galjart, W. Niessen, E. Meijering Information Processing in Medical Imaging – IPMI 2007 (Kerkrade, Limburg, The Netherlands, July 2-6, 2007), N. Karssemeijer and B. Lelieveldt (eds.), Lecture Notes in Computer Science, Springer-Verlag, Berlin, 2007, pp. 110-121 Preprint
  • Bayesian Tracking of Elongated Structures in 3D Images M. Schaap, I. Smal, C. Metz, T. van Walsum and W.J. Niessen Information Processing in Medical Imaging – IPMI 2007 (Kerkrade, Limburg, The Netherlands, July 2-6, 2007), N. Karssemeijer and B. Lelieveldt (eds.), Lecture Notes in Computer Science, Springer-Verlag, Berlin, 2007, pp. 74-85 Preprint
  • Advanced Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images I. Smal, W. Niessen, E. Meijering Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro (Arlington, VA, USA, April 12-15, 2007), IEEE, Piscataway, NJ, 2007, pp. 1048-1051 Preprint
  • Particle Filtering for Multiple Object Tracking in Molecular Cell Biology I. Smal, W. Niessen, E. Meijering Proceedings of the 2006 Nonlinear Statistical Signal Processing Workshop (Cambridge, UK, September 13-15, 2006), IEEE, Piscataway, NJ, 2006 Preprint
  • Bayesian Tracking for Fluorescence Microscopic Imaging I. Smal, W. Niessen, E. Meijering Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro (Arlington, VA, USA, April 6-9, 2006), IEEE, Piscataway, NJ, 2006, pp. 550-553 Preprint
  • Synthesis of Oscillators with One Degree of Freedom which Reproduce Oscillations with the Prescribed Waveform L. A. Sinitsky, I. Smal Proceeding of Third International Scientific Technical Conference “Mathematical Modeling in Electrical Engineering” Lviv, Ukraine, Oct. 25-30, 1999. pp.248-250
  • Synthesis of Relaxation Oscillators with the Prescribed Impulse Form I. Smal Proceeding of Third International Scientific Technical Conference “Mathematical Modeling in Electrical Engineering” Lviv, Ukraine, Oct. 25-30, 1999, pp. 255-257