- Self-adaptive deep learning-based segmentation for universal and functional clinical and preclinical CT image analysis
A.-W. Zwijnen, L. Watzema, Y. Ridwan, I. van Der Pluijm, I. Smal and J. Essers
Computers in Biology and Medicine, vol. 179, 2024 (preprint)
- Distinct mobility patterns of BRCA2 molecules at DNA damage sites
M. W. Paul, J. Aaron, E. Wait, R. M. van Genderen, A. Tyagi, H. Kabbech, I. Smal, T.-L. Chew, R. Kanaar and C. Wyman
Nucleic Acids Research, 2024 (doi)
- The microtubule binding protein CLASP2 safeguards hematopoietic stem cell properties during mouse and fish development
A. Klaus, T. Clapes, L. Yvernogeau, S. Basu, B. Weijts, J. Maas, I. Smal, N. Galjart, C. Robin
Cell Reports, 2022
- SMARCAD1-mediated active replication fork stability maintains genome integrity
C.S.Y. Lo, M van Toorn, V. Gaggioli, D.M. Paes, Y. Zhu, E.M. Manolika, W. Zhao, M. van der Does, C. Mukherjee, J. Souto Goncalves, M.E. van Royen, P.J. French, J. Demmers, I. Smal, H. Lans, D. Wheeler, J. Jonkers, A.R. Chaudhuri, J.A. Marteijn, N. Taneja
Science Advances, vol. 5, 2021, reprint
- Objective comparison of methods to decode anomalous diffusion
G. Munoz-Gil, G. Volpe, M. Angel Garcia-March, E. Aghion, A. Argun, Ch. Beom Hong, T. Bland, S. Bo, J. A. Conejero, N. Firbas, O.G.I. Orts, A. Gentili, Z. Huang, J.-H. Jeon, H. Kabbech, Y. Kim, P. Kowalek, D. Krapf, H. Loch-Olszewska, M.A. Lomholt, J.-B. Masson, Ph.G. Meyer, S. Park, B. Requena, I. Smal, T. Song, J. Szwabin ́ski, S. Thapa, H. Verdier, G. Volpe, A. Widera, M. Lewenstein, R. Metzler, C. Manzo
Nature Communication, vol. 12, 2021, reprint
- Protein Phosphatase 2B Dual Function Facilitates Synaptic Integrity and Motor Learning
Zh. Lin, B. Wu, M. W. Paul, K. W. Li, Y. Yao, I. Smal, M. Proietti Onori, H. Hasanbegovic, K. Bezstarosti, J. Demmers, A. B. Houtsmuller, E. Meijering, F. Hoebeek, M. Schonewille, A. B. Smit, Zh. Gao, Ch. I. de Zeeuw
Journal of Neuroscience, 41(26):5579-5594, 2021, reprint
- Deep Learning Method for Data Association in Particle Tracking
Y. Yao, I. Smal, I. Grigoriev, A. Akhmanova, E. Meijering
Bioinformatics, 36, 2020, reprint
- Multifaceted actions of Zeb2 in postnatal neurogenesis from the ventricular- subventricular zone to the olfactory bulb
A. Deryckere, E. Stappers, R. Dries, E. Peyre, V. van den Berghe, A. Conidi, F. I. Zampeta, A. Francis, M. Bresseleers, A. Stryjewska, R. Vanlaer, E. Maas, I. Smal, W. F. J. van IJcken, F. G. Grosveld, L. Nguyen, D. Huylebroeck, E. Seuntjens
Development, 147, 2020, reprint
- Dynamic coronary roadmapping via catheter tip tracking in X-ray fluoroscopy with deep learning based Bayesian filtering
H. Ma, I. Smal, J. Daemen, T. van Walsum
Medical Image Analysis, 61, 2020, reprint
- Concerted action of kinesins KIF5B and KIF13B pro- motes efficient secretory vesicle transport to microtubule plus ends
A. Serra-Marques, M. Martin, E.A. Katrukha, I. Grigoriev, C.A. Peeters, Q. Liu, P.J. Hooikaas, Y. Yao, V. Solianova, I. Smal, L.B. Pedersen, E. Meijering, L.C. Kapitein, A. Akhmanova
eLife, 11, 2020, reprint
- Particle Mobility Analysis Using Deep Learning and the Moment Scaling Spectrum
M. Arts, I. Smal, M. W. Paul, C. Wyman, E. Meijering
Nature Scientific Reports, 9:17160, 2019
Reprint
- Automated neuron detection in high-content fluorescence microscopy images using machine learning
G. Mata, M. Rado jevic, C. Fernandez-Lozano, I. Smal, M. Morales, E. Meijering, and J. Rubio
Neuroinformatics,, 14(12):1141-1152, 2018
Reprint
- An Objective Comparison of Cell-Tracking Algorithms
V. Ulman, M. Maska, K. E. G. Magnusson, O. Ronneb erger, C. Haub old, N. Harder, P. Matula, P. Matula, D. Svob o da, M. Rado jevic, I. Smal, K. Rohr, J. Jalden, H. M. Blau, O. Dzyubachyk, B. P. F. Lelieveldt, P. Xiao, Y. Li, S. Y. Cho, A. C. Dufour, J. C. Olivo-Marin, C. C. Reyes-Aldasoro, J. A. Solis-Lemus, R. Bensch, T. Brox, J. Stegmaier, R. Mikut, S. Wolf, F. A. Hamprecht, T. Esteves, P. Quelhas, O. Demirel, L. Malmstrm, F. Jug, P. Tomanck, E. Meijering, A. Munoz-Barrutia, M. Kozubek, and C. Ortiz de Solorzano
Nature Methods, 14(12):1141-1152, 2017
Reprint
- EB1 and EB3 Regulate Microtubule Minus End Organization and Golgi Morphology
C. Yang, J. Wu, C. de Heus, I. Grigoriev, N. Liv, Y. Yao, I. Smal, and E. Meijering, J. Klumperman, R. Z. Qi, A. Akhmanova
Journal of Cell Biology, 216(10):3179-3198, 2017
Reprint
- Supra-Analysis of Intracellular Dynamic Processes
Y. Yao, I. Smal, and E. Meijering
Methods in Molecular Biology, 1563:209-228, 2017
Reprint
- A Hidden Markov Model for 3D Catheter Tip Tracking with 2D X-ray Catheterization Sequence and 3D Rotational Angiography
P. Ambrosini, I. Smal, D. Ruijters, W. J. Niessen, A. Moelker and T. van Walsum
IEEE Transactions on Medical Imaging, 36:757-768, 2016
Reprint
- Stochastic Optimization with Randomized Smoothing for Image Registration
W. Sun, D. H. J. Poot, I. Smal, X. Yang, W.J. Niessen and S. Klein
Medical Image Analysis, 6(35):146-158, 2016
Reprint
- Fuzzy-Logic Based Detection and Characterization of Junctions and Terminations in Fluorescence Microscopy Images of Neurons
M. Radojevic, I. Smal, E. Meijering
Neuroinformatics, 14(2):201-219, 2016
Reprint
- Marker-Less Stage Drift Correction in Super-Resolution Microscopy Using the Single-Cluster PHD Filter
I. Schlangen, J. Franco, J. Houssineau, W. T. E. Pitkeathly, D. Clark, I. Smal, C. Rickman
IEEE Journal on Selected Topics in Signal Processing, 10(1):193-202, 2016
Reprint
- Isolation of Functional Tubulin Dimers and of Tubulin-Associated Proteins from Mammalian Cells
N. Yu, L. Signorile, S. Basu, S. Ottema, J. H. Lebbink, K. Leslie, I. Smal, D. Dekkers, J. Demmers, N. Galjart
Current Biology, 26(13):1728-1736, 2016
Reprint
- Quantitative Comparison of Multiframe Data Association Techniques for Particle Tracking in Time-Lapse Fluorescence Microscopy
I. Smal, E. Meijering
Medical Image Analysis, 24(1):163-189, 2015
Reprint
- Quantitative Imaging of Focal Adhesion Dynamics and their Regulation by HGF and Rap1 Signaling
E. Spanjaard, I. Smal, N. Angelopoulos, I. Verlaan, A. Matov, E. Meijering, L. Wessels, H. Bos, J. de Rooij
Experimental Cell Research, 330(2):382-397, 2015
Reprint
- CLASP2-dependent Microtubule Capture at the Neuromuscular Junction Membrane Requires LL5β and Actin for Focal Delivery of Acetylcholine Receptor Vesicles
S. Basu, S. Sladecek, I. Martinez de la Pena y Valenzuela, M. Akaaboune, I. Smal, K. Martin, N. Galjart, H.R. Brenner
Molecular Biology of the Cell, 26(5):938-951, 2015
Reprint
- BRCA2 diffuses as oligomeric clusters with RAD51 and changes mobility after DNA damage in live cells
M. Reuter, A. Zelensky, I. Smal, E. Meijering, W. A. van Cappellen, H. M. de Gruiter, G. J. van Belle, M. E. van Royen, A. B. Houtsmuller, J. Essers, R. Kanaar, C. Wyman
Journal of Cell Biology, 207(5):599-613, 2014
Reprint
- Quantitative Imaging of Focal Adhesion Dynamics and their Regulation by HGF and Rap1 Signaling
E. Spanjaard, I. Smal, N. Angelopoulos, I. Verlaan, A. Matov, E. Meijering, L. Wessels, H. Bos, J. de Rooij
Experimental Cell Research, in press, 2014
Reprint Abstract
- Objective Comparison of Particle Tracking Methods
N. Chenouard, I. Smal, F. de Chaumont, M. Maska, I. F. Sbalzarini, Y. Gong, J. Cardinale, C. Carthel, S. Coraluppi, M. Winter, A. R. Cohen, W. J. Godinez, K. Rohr, Y. Kalaidzidis, L. Liang, J. Duncan, H. Shen, Y. Xu, K. E. G. Magnusson, J. Jalden, H. M. Blau, P. Paul-Gilloteaux, P. Roudot, C. Kervrann, F. Waharte, J. Y. Tinevez, S. L. Shorte, J. Willemse, K. Celler, G. P. van Wezel, H. W. Dan, Y. S. Tsai, C. Ortiz de Solorzano, J. C. Olivo-Marin, E. Meijering
Nature Methods, 11(3):281-289, 2014
Reprint Abstract
- End-Binding Proteins Sensitize Microtubules to the Action of Microtubule-Targeting Agents
R. Mohan, E. A. Katrukha, H. Doodhi, I. Smal, E. Meijering, L. C. Kapitein, M. O. Steinmetz, A. Akhmanova
Proceedings of the National Academy of Sciences of the United States of America, 110(22):8900-8905, May 2013
Reprint PubMed
- Reversible Jump MCMC Methods for Fully Automatic Motion Analysis in Tagged MRI
I. Smal, N. Carranza-Herrezuelo, S. Klein, P. Wielopolski, A. Moelker, T. Springeling, M. Bernsen, W. Niessen, E. Meijering
Medical Image Analysis, 16(1):301-324, January 2012
Preprint Reprint
- Insights into EB Structure and the Role of its C-terminal Domain in Discriminating Microtubule Tips from Lattice
R. M. Buey, R. Mohan, K. Leslie, T. Walzthoeni, J. H. Missimer, A. Menzel, S. Bjelic, K. Bargsten, I. Grigoriev, I. Smal, E. Meijering, R. Aebersold, A. Akhmanova, M. O. Steinmetz
Molecular Biology of the Cell, 22(16):2912-2923, July 2011
Reprint Reprint
- Rab6, Rab8 and MICAL3 Cooperate in Controlling Docking and Fusion of Exocytotic Carriers
I. Grigoriev, K. L. Yu, E. Martinez-Sanchez, A. Serra-Marques, I. Smal, E. Meijering, J. Demmers, J. Peränen, R. J. Pasterkamp, P. van der Sluijs, C. C. Hoogenraad, A. Akhmanova
Current Biology, 21(11):967-974, May 2011
Reprint Preprint
- In Vitro Reconstitution of the Functional Interplay between MCAK and EB3 at Microtubule Plus Ends
S. Montenegro Gouveia, K. Leslie, L. C. Kapitein, R. M. Buey, I. Grigoriev, M. Wagenbach, I. Smal, E. Meijering, C. C. Hoogenraad, L. Wordeman, M. O. Steinmetz and A. Akhmanova
Current Biology, 20(19):1717-1722, October 2010
Reprint Preprint
- History-Dependent Catastrophes Regulate Axonal Microtubule Behaviour
T. Stepanova, I. Smal, J. van Haren, U. Akinci, Z. Liu, M. Miedema, R. Limpens, M. van Ham, M. van der Reijden, R. Poot, F. Grosveld, M. Mommaas, E. Meijering, N. Galjart
Current Biology, 20(11):1023-1028, May 2010
Reprint Preprint
- Tracking in Cell and Developmental Biology
E. Meijering, O. Dzyubachyk, I. Smal, W. A. van Cappellen
Seminars in Cell and Developmental Biology, 20(8):894-902, October 2009
Preprint Reprint
- Microtubule Dynamics Analysis Using Kymographs and Variable-Rate Particle Filters
I. Smal, I. Grigoriev, A. Akhmanova, W. J. Niessen, E. Meijering
IEEE Transactions on Image Processing, 19(7):1861-1876, July 2010
Preprint Reprint
- Quantitative Comparison of Spot Detection Methods in Fluorescence Microscopy
I. Smal, M. Loog, W. Niessen, E. Meijering
IEEE Transactions on Medical Imaging, 29(2):282-301, February 2010
Preprint Reprint
- Multiple Object Tracking in Molecular Bioimaging by Rao-Blackwellized Marginal Particle Filtering
I. Smal, E. Meijering, K. Draegestein, N. Galjart, I. Grigoriev, A. Akhmanova, M. E. van Royen, A. B. Houtsmuller, W. Niessen
Medical Image Analysis, 12(6):764-777, December 2008
Preprint Reprint
- Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images: Application to Microtubule Growth Analysis
I. Smal, K. Draegestein, N. Galjart, W. Niessen, E. Meijering
IEEE Transactions on Medical Imaging, 27(6):789-804, June 2008
Preprint Reprint
- Tracking in Molecular Bioimaging
E. Meijering, I. Smal, G. Danuser
IEEE Signal Processing Magazine, 23(3):46-53, May 2006
Preprint Reprint
- Investigation of Subharmonic Oscillations in Ferroresonance Circuits
I. Smal
Technical Electrodynamics, 4:14-18, Kiev, Ukraine, 2001
Preprint
- Influence of the Approximation of the Magnetizing Curve on the Results of Calculations of the Ferroresonance in the RLC-circuit
L. A. Sinitsky, I. Smal
Digest of National Lviv University “Lvivska Politehnika”, 418:153-159, Lviv, Ukraine, 2001
- Synthesis of Oscillators Reproducing one of the Solutions of Hamiltonian System
L. A. Sinitsky,I. Smal
Journal of Physical Studies, 4(1):1-5, Lviv, Ukraine, 2000
Preprint
- Synthesis of Oscillators of Relaxation Oscillations with prescribed Form of Impulses
L. A. Sinitsky, I. Smal
Electronics and Communication, 7:26-32, Kiev, Ukraine, 1999
Preprint
- On the Simulation of Oscillations of Given Form
L. A. Sinitsky, I. Smal
Engineering Simulation, 17:23-32, USA, 1999 (and reprinted in Electronic Modeling, 21(1):19-27, Kiev, Ukraine, 1999)
Preprint
