Journal Papers

  • Particle Mobility Analysis Using Deep Learning and the Moment Scaling Spectrum M. Arts, I. Smal, M. W. Paul, C. Wyman, E. Meijering Nature Scientific Reports,, 9:17160, 2019 Reprint
  • Automated neuron detection in high-content fluorescence microscopy images using machine learning G. Mata, M. Rado jevic, C. Fernandez-Lozano, I. Smal, M. Morales, E. Meijering, and J. Rubio Neuroinformatics,, 14(12):1141-1152, 2018 Reprint
  • An Objective Comparison of Cell-Tracking Algorithms V. Ulman, M. Maska, K. E. G. Magnusson, O. Ronneb erger, C. Haub old, N. Harder, P. Matula, P. Matula, D. Svob o da, M. Rado jevic, I. Smal, K. Rohr, J. Jalden, H. M. Blau, O. Dzyubachyk, B. P. F. Lelieveldt, P. Xiao, Y. Li, S. Y. Cho, A. C. Dufour, J. C. Olivo-Marin, C. C. Reyes-Aldasoro, J. A. Solis-Lemus, R. Bensch, T. Brox, J. Stegmaier, R. Mikut, S. Wolf, F. A. Hamprecht, T. Esteves, P. Quelhas, O. Demirel, L. Malmstrm, F. Jug, P. Tomanck, E. Meijering, A. Munoz-Barrutia, M. Kozubek, and C. Ortiz de Solorzano Nature Methods, 14(12):1141-1152, 2017 Reprint
  • EB1 and EB3 Regulate Microtubule Minus End Organization and Golgi Morphology C. Yang, J. Wu, C. de Heus, I. Grigoriev, N. Liv, Y. Yao, I. Smal, and E. Meijering Journal of Cell Biology, 216(10):3179-3198, 2017 Reprint
  • Supra-Analysis of Intracellular Dynamic Processes Y. Yao, I. Smal, and E. Meijering Methods in Molecular Biology, 1563:209-228, 2017 Reprint
  • A Hidden Markov Model for 3D Catheter Tip Tracking with 2D X-ray Catheterization Sequence and 3D Rotational Angiography P. Ambrosini, I. Smal, D. Ruijters, W. J. Niessen, A. Moelker and T. van Walsum IEEE Transactions on Medical Imaging, 36:757-768, 2016 Reprint
  • Stochastic Optimization with Randomized Smoothing for Image Registration W. Sun, D. H. J. Poot, I. Smal, X. Yang, W.J. Niessen and S. Klein Medical Image Analysis, 6(35):146-158, 2016 Reprint
  • Fuzzy-Logic Based Detection and Characterization of Junctions and Terminations in Fluorescence Microscopy Images of Neurons M. Radojevic, I. Smal, E. Meijering Neuroinformatics, 14(2):201-219, 2016 Reprint
  • Marker-Less Stage Drift Correction in Super-Resolution Microscopy Using the Single-Cluster PHD Filter I. Schlangen, J. Franco, J. Houssineau, W. T. E. Pitkeathly, D. Clark, I. Smal, C. Rickman IEEE Journal on Selected Topics in Signal Processing, 10(1):193-202, 2016 Reprint
  • Isolation of Functional Tubulin Dimers and of Tubulin-Associated Proteins from Mammalian Cells N. Yu, L. Signorile, S. Basu, S. Ottema, J. H. Lebbink, K. Leslie, I. Smal, D. Dekkers, J. Demmers, N. Galjart Current Biology, 26(13):1728-1736, 2016 Reprint
  • Quantitative Comparison of Multiframe Data Association Techniques for Particle Tracking in Time-Lapse Fluorescence Microscopy I. Smal, E. Meijering Medical Image Analysis, 24(1):163-189, 2015 Reprint
  • Quantitative Imaging of Focal Adhesion Dynamics and their Regulation by HGF and Rap1 Signaling E. Spanjaard, I. Smal, N. Angelopoulos, I. Verlaan, A. Matov, E. Meijering, L. Wessels, H. Bos, J. de Rooij Experimental Cell Research, 330(2):382-397, 2015 Reprint
  • CLASP2-dependent Microtubule Capture at the Neuromuscular Junction Membrane Requires LL5β and Actin for Focal Delivery of Acetylcholine Receptor Vesicles S. Basu, S. Sladecek, I. Martinez de la Pena y Valenzuela, M. Akaaboune, I. Smal, K. Martin, N. Galjart, H.R. Brenner Molecular Biology of the Cell, 26(5):938-951, 2015 Reprint
  • BRCA2 diffuses as oligomeric clusters with RAD51 and changes mobility after DNA damage in live cells M. Reuter, A. Zelensky, I. Smal, E. Meijering, W. A. van Cappellen, H. M. de Gruiter, G. J. van Belle, M. E. van Royen, A. B. Houtsmuller, J. Essers, R. Kanaar, C. Wyman Journal of Cell Biology, 207(5):599-613, 2014 Reprint
  • Quantitative Imaging of Focal Adhesion Dynamics and their Regulation by HGF and Rap1 Signaling E. Spanjaard, I. Smal, N. Angelopoulos, I. Verlaan, A. Matov, E. Meijering, L. Wessels, H. Bos, J. de Rooij Experimental Cell Research, in press, 2014 Reprint  Abstract
  • Objective Comparison of Particle Tracking Methods N. Chenouard, I. Smal, F. de Chaumont, M. Maska, I. F. Sbalzarini, Y. Gong, J. Cardinale, C. Carthel, S. Coraluppi, M. Winter, A. R. Cohen, W. J. Godinez, K. Rohr, Y. Kalaidzidis, L. Liang, J. Duncan, H. Shen, Y. Xu, K. E. G. Magnusson, J. Jalden, H. M. Blau, P. Paul-Gilloteaux, P. Roudot, C. Kervrann, F. Waharte, J. Y. Tinevez, S. L. Shorte, J. Willemse, K. Celler, G. P. van Wezel, H. W. Dan, Y. S. Tsai, C. Ortiz de Solorzano, J. C. Olivo-Marin, E. Meijering Nature Methods, 11(3):281-289, 2014 Reprint  Abstract
  • End-Binding Proteins Sensitize Microtubules to the Action of Microtubule-Targeting Agents R. Mohan, E. A. Katrukha, H. Doodhi, I. Smal, E. Meijering, L. C. Kapitein, M. O. Steinmetz, A. Akhmanova Proceedings of the National Academy of Sciences of the United States of America, 110(22):8900-8905, May 2013 Reprint  PubMed
  • Reversible Jump MCMC Methods for Fully Automatic Motion Analysis in Tagged MRI I. Smal, N. Carranza-Herrezuelo, S. Klein, P. Wielopolski, A. Moelker, T. Springeling, M. Bernsen, W. Niessen, E. Meijering Medical Image Analysis, 16(1):301-324, January 2012 Preprint  Reprint
  • Insights into EB Structure and the Role of its C-terminal Domain in Discriminating Microtubule Tips from Lattice R. M. Buey, R. Mohan, K. Leslie, T. Walzthoeni, J. H. Missimer, A. Menzel, S. Bjelic, K. Bargsten, I. Grigoriev, I. Smal, E. Meijering, R. Aebersold, A. Akhmanova, M. O. Steinmetz Molecular Biology of the Cell, 22(16):2912-2923, July 2011 Reprint  Reprint
  • Rab6, Rab8 and MICAL3 Cooperate in Controlling Docking and Fusion of Exocytotic Carriers I. Grigoriev, K. L. Yu, E. Martinez-Sanchez, A. Serra-Marques, I. Smal, E. Meijering, J. Demmers, J. Peränen, R. J. Pasterkamp, P. van der Sluijs, C. C. Hoogenraad, A. Akhmanova Current Biology, 21(11):967-974, May 2011 Reprint  Preprint
  • In Vitro Reconstitution of the Functional Interplay between MCAK and EB3 at Microtubule Plus Ends S. Montenegro Gouveia, K. Leslie, L. C. Kapitein, R. M. Buey, I. Grigoriev, M. Wagenbach, I. Smal, E. Meijering, C. C. Hoogenraad, L. Wordeman, M. O. Steinmetz and A. Akhmanova Current Biology, 20(19):1717-1722, October 2010 Reprint  Preprint
  • History-Dependent Catastrophes Regulate Axonal Microtubule Behaviour T. Stepanova, I. Smal, J. van Haren, U. Akinci, Z. Liu, M. Miedema, R. Limpens, M. van Ham, M. van der Reijden, R. Poot, F. Grosveld, M. Mommaas, E. Meijering, N. Galjart Current Biology, 20(11):1023-1028, May 2010 Reprint  Preprint
  • Tracking in Cell and Developmental Biology E. Meijering, O. Dzyubachyk, I. Smal, W. A. van Cappellen Seminars in Cell and Developmental Biology, 20(8):894-902, October 2009 Preprint  Reprint
  • Microtubule Dynamics Analysis Using Kymographs and Variable-Rate Particle Filters I. Smal, I. Grigoriev, A. Akhmanova, W. J. Niessen, E. Meijering IEEE Transactions on Image Processing, 19(7):1861-1876, July 2010 Preprint  Reprint
  • Quantitative Comparison of Spot Detection Methods in Fluorescence Microscopy I. Smal, M. Loog, W. Niessen, E. Meijering IEEE Transactions on Medical Imaging, 29(2):282-301, February 2010 Preprint  Reprint
  • Multiple Object Tracking in Molecular Bioimaging by Rao-Blackwellized Marginal Particle Filtering I. Smal, E. Meijering, K. Draegestein, N. Galjart, I. Grigoriev, A. Akhmanova, M. E. van Royen, A. B. Houtsmuller, W. Niessen Medical Image Analysis, 12(6):764-777, December 2008 Preprint  Reprint
  • Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images: Application to Microtubule Growth Analysis I. Smal, K. Draegestein, N. Galjart, W. Niessen, E. Meijering IEEE Transactions on Medical Imaging, 27(6):789-804, June 2008 Preprint  Reprint
  • Tracking in Molecular Bioimaging E. Meijering, I. Smal, G. Danuser IEEE Signal Processing Magazine, 23(3):46-53, May 2006 Preprint  Reprint
  • Investigation of Subharmonic Oscillations in Ferroresonance Circuits I. Smal Technical Electrodynamics, 4:14-18, Kiev, Ukraine, 2001 Preprint
  • Influence of the Approximation of the Magnetizing Curve on the Results of Calculations of the Ferroresonance in the RLC-circuit L. A. Sinitsky, I. Smal Digest of National Lviv University “Lvivska Politehnika”, 418:153-159, Lviv, Ukraine, 2001
  • Synthesis of Oscillators Reproducing one of the Solutions of Hamiltonian System L. A. Sinitsky,I. Smal Journal of Physical Studies, 4(1):1-5, Lviv, Ukraine, 2000 Preprint
  • Synthesis of Oscillators of Relaxation Oscillations with prescribed Form of Impulses L. A. Sinitsky, I. Smal Electronics and Communication, 7:26-32, Kiev, Ukraine, 1999 Preprint
  • On the Simulation of Oscillations of Given Form L. A. Sinitsky, I. Smal Engineering Simulation, 17:23-32, USA, 1999 (and reprinted in Electronic Modeling, 21(1):19-27, Kiev, Ukraine, 1999) Preprint